![]() The weight expresses at which level both genes are co-expressed. An edge between two nodes means that they are co-expressed. This undirected weighted networks contains 537 nodes representing genes and 4801 edges. This network we will study consist in the top scoring edges of the yeast co-expression network included in the integrative database String. In this demonstration, we will show you how to visualize a network using some popular network visualization tools. An adjacency matrix is a x table (with the number of nodes), where a cell indicates the weight of the edge between nodes and (or 1 if the graph is unweighted). Several tools also accept adjacency matrices as input.VisML is the XML format required by VisANT, a very light but powerful visualisation tool. ![]() Similarly to GML, DOT supports various attributes on nodes (i.e. ![]() It is a simple way of describing graphs in a human- and computer-readable format. DOT files can be loaded in the programs of the suite GraphViz (). The DOT format is a plain text graph description language.More information on this format can be found at. The most popular graph editors support GML as input format (like Cytoscape and yED). ![]()
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